WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C50E10.4a Sequence Name  C50E10.4a
Length (nt)  2208   Chromosome Location  II: 12339946-12340035
Chromosome . Primary Identifier  II Chromosome Location . Start  12339946
Chromosome Location . End  12340035
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C50E10.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE32334 SOP-2, isoform a 80.8 735 Caenorhabditis elegans
 

Other

21 RNAi

WormBase ID
WBRNAi00067610
WBRNAi00067651
WBRNAi00068171
WBRNAi00042458
WBRNAi00042901
WBRNAi00070225
WBRNAi00011935
WBRNAi00012215
WBRNAi00076228
WBRNAi00030027
WBRNAi00086989
WBRNAi00086988
WBRNAi00086990
WBRNAi00089599
WBRNAi00089629
WBRNAi00086991
WBRNAi00087183
WBRNAi00070226
WBRNAi00070227
WBRNAi00086992
WBRNAi00117641

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C50E10.4a 12339946 12340035 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004945 sop-2 C50E10.4 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:C50E10.4a 12339946 12340035 1
CDS:C50E10.4a 12340372 12340438 1
CDS:C50E10.4a 12340656 12341151 1
CDS:C50E10.4a 12341923 12342268 1
CDS:C50E10.4a 12342636 12343505 1
CDS:C50E10.4a 12343557 12343619 1
CDS:C50E10.4a 12344135 12344410 1

1 Sequence

Length
2208

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C50E10.4a.1 C50E10.4a.1 2599   II: 12339944-12344799