WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y46G5A.2.1 Sequence Name  Y46G5A.2.1
Length (nt)  1571   Chromosome Location  II: 12679954-12686765
Chromosome . Primary Identifier  II Chromosome Location . Start  12679954
Chromosome Location . End  12686765 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012895 cox-10 Y46G5A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y46G5A.2 Y46G5A.2 1194   II: 12679975-12680076

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.2.1 12679954 12686765 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72030   123   II: 12679954-12680076 Caenorhabditis elegans
Exon72031   112   II: 12680122-12680233 Caenorhabditis elegans
Exon72032   108   II: 12681556-12681663 Caenorhabditis elegans
Exon72033   66   II: 12681717-12681782 Caenorhabditis elegans
Exon72034   106   II: 12681829-12681934 Caenorhabditis elegans
Exon72035   125   II: 12682917-12683041 Caenorhabditis elegans
Exon72036   203   II: 12683977-12684179 Caenorhabditis elegans
Exon72037   136   II: 12684376-12684511 Caenorhabditis elegans
Exon72038   188   II: 12685509-12685696 Caenorhabditis elegans
Exon72039   404   II: 12686362-12686765 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.2.1 12679954 12686765 1

1 Sequence

Length
1571

1 Sequence Ontology Term

Identifier Name Description
transcript