WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y46G5A.1a.1 Sequence Name  Y46G5A.1a.1
Length (nt)  3601   Chromosome Location  II: 12694412-12725483
Chromosome . Primary Identifier  II Chromosome Location . Start  12694412
Chromosome Location . End  12725483 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012894 tbc-17 Y46G5A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y46G5A.1a Y46G5A.1a 3222   II: 12694453-12694538

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.1a.1 12694412 12725483 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72040   127   II: 12694412-12694538 Caenorhabditis elegans
Exon72043   181   II: 12694765-12694945 Caenorhabditis elegans
Exon72046   320   II: 12696129-12696448 Caenorhabditis elegans
Exon72049   284   II: 12697088-12697371 Caenorhabditis elegans
Exon72052   289   II: 12698776-12699064 Caenorhabditis elegans
Exon72055   181   II: 12700617-12700797 Caenorhabditis elegans
Exon72058   70   II: 12701656-12701725 Caenorhabditis elegans
Exon72063   172   II: 12716760-12716931 Caenorhabditis elegans
Exon72066   351   II: 12716992-12717342 Caenorhabditis elegans
Exon72069   428   II: 12717825-12718252 Caenorhabditis elegans
Exon72072   125   II: 12718769-12718893 Caenorhabditis elegans
Exon72075   148   II: 12719964-12720111 Caenorhabditis elegans
Exon72078   167   II: 12721100-12721266 Caenorhabditis elegans
Exon72082   167   II: 12721816-12721982 Caenorhabditis elegans
Exon72084   140   II: 12723583-12723722 Caenorhabditis elegans
Exon72088   451   II: 12725033-12725483 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.1a.1 12694412 12725483 1

1 Sequence

Length
3601

1 Sequence Ontology Term

Identifier Name Description
transcript