WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y46G5A.1c.1 Sequence Name  Y46G5A.1c.1
Length (nt)  2790   Chromosome Location  II: 12715671-12725566
Chromosome . Primary Identifier  II Chromosome Location . Start  12715671
Chromosome Location . End  12725566 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012894 tbc-17 Y46G5A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y46G5A.1c Y46G5A.1c 2334   II: 12715706-12716228

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.1c.1 12715671 12725566 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72062   558   II: 12715671-12716228 Caenorhabditis elegans
Exon72065   172   II: 12716760-12716931 Caenorhabditis elegans
Exon72068   351   II: 12716992-12717342 Caenorhabditis elegans
Exon72071   428   II: 12717825-12718252 Caenorhabditis elegans
Exon72074   125   II: 12718769-12718893 Caenorhabditis elegans
Exon72077   148   II: 12719964-12720111 Caenorhabditis elegans
Exon72080   167   II: 12721100-12721266 Caenorhabditis elegans
Exon72083   167   II: 12721816-12721982 Caenorhabditis elegans
Exon72086   140   II: 12723583-12723722 Caenorhabditis elegans
Exon72089   534   II: 12725033-12725566 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.1c.1 12715671 12725566 1

1 Sequence

Length
2790

1 Sequence Ontology Term

Identifier Name Description
transcript