WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y46G5A.4.1 Sequence Name  Y46G5A.4.1
Length (nt)  6817   Chromosome Location  II: 12726963-12736910
Chromosome . Primary Identifier  II Chromosome Location . Start  12726963
Chromosome Location . End  12736910 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012896 snrp-200 Y46G5A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y46G5A.4 Y46G5A.4 6438   II: 12727307-12727496

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.4.1 12726963 12736910 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72090   534   II: 12726963-12727496 Caenorhabditis elegans
Exon72091   763   II: 12727623-12728385 Caenorhabditis elegans
Exon72092   229   II: 12728441-12728669 Caenorhabditis elegans
Exon72095   161   II: 12729470-12729630 Caenorhabditis elegans
Exon72096   411   II: 12729831-12730241 Caenorhabditis elegans
Exon72097   310   II: 12730650-12730959 Caenorhabditis elegans
Exon72098   390   II: 12732102-12732491 Caenorhabditis elegans
Exon72099   1176   II: 12732605-12733780 Caenorhabditis elegans
Exon72100   408   II: 12733843-12734250 Caenorhabditis elegans
Exon72101   1138   II: 12734309-12735446 Caenorhabditis elegans
Exon72102   823   II: 12735565-12736387 Caenorhabditis elegans
Exon72103   474   II: 12736437-12736910 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.4.1 12726963 12736910 -1

1 Sequence

Length
6817

1 Sequence Ontology Term

Identifier Name Description
transcript