WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y46G5A.21.1 Sequence Name  Y46G5A.21.1
Length (nt)  2052   Chromosome Location  II: 12811888-12816462
Chromosome . Primary Identifier  II Chromosome Location . Start  12811888
Chromosome Location . End  12816462 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.21.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012911 acl-7 Y46G5A.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y46G5A.21 Y46G5A.21 2016   II: 12811919-12812014

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.21.1 12811888 12816462 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72235   127   II: 12811888-12812014 Caenorhabditis elegans
Exon72236   117   II: 12812070-12812186 Caenorhabditis elegans
Exon72237   271   II: 12812427-12812697 Caenorhabditis elegans
Exon72238   92   II: 12812929-12813020 Caenorhabditis elegans
Exon72239   169   II: 12813064-12813232 Caenorhabditis elegans
Exon72240   131   II: 12813540-12813670 Caenorhabditis elegans
Exon72241   537   II: 12813713-12814249 Caenorhabditis elegans
Exon72242   111   II: 12815148-12815258 Caenorhabditis elegans
Exon72243   288   II: 12815308-12815595 Caenorhabditis elegans
Exon72244   209   II: 12816254-12816462 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.21.1 12811888 12816462 -1

1 Sequence

Length
2052

1 Sequence Ontology Term

Identifier Name Description
transcript