WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38F1A.5.2 Sequence Name  Y38F1A.5.2
Length (nt)  2012   Chromosome Location  II: 12980591-12993117
Chromosome . Primary Identifier  II Chromosome Location . Start  12980591
Chromosome Location . End  12993117 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38F1A.5.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000870 cyd-1 Y38F1A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38F1A.5 Y38F1A.5 1218   II: 12988223-12988336

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38F1A.5.2 12980591 12993117 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72527   148   II: 12980591-12980738 Caenorhabditis elegans
Exon72528   83   II: 12982126-12982208 Caenorhabditis elegans
Exon72529   114   II: 12988223-12988336 Caenorhabditis elegans
Exon72532   330   II: 12988631-12988960 Caenorhabditis elegans
Exon72534   262   II: 12989073-12989334 Caenorhabditis elegans
Exon72537   137   II: 12991991-12992127 Caenorhabditis elegans
Exon72539   938   II: 12992180-12993117 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38F1A.5.2 12980591 12993117 1

1 Sequence

Length
2012

1 Sequence Ontology Term

Identifier Name Description
transcript