WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38F1A.10c.1 Sequence Name  Y38F1A.10c.1
Length (nt)  3048   Chromosome Location  II: 13014326-13025844
Chromosome . Primary Identifier  II Chromosome Location . Start  13014326
Chromosome Location . End  13025844 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38F1A.10c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003144 max-2 Y38F1A.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38F1A.10c Y38F1A.10c 1941   II: 13015367-13015463

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38F1A.10c.1 13014326 13025844 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72629   1138   II: 13014326-13015463 Caenorhabditis elegans
Exon72636   113   II: 13016104-13016216 Caenorhabditis elegans
Exon72642   151   II: 13017269-13017419 Caenorhabditis elegans
Exon72648   114   II: 13017469-13017582 Caenorhabditis elegans
Exon72655   533   II: 13018448-13018980 Caenorhabditis elegans
Exon72659   144   II: 13019748-13019891 Caenorhabditis elegans
Exon72665   206   II: 13023652-13023857 Caenorhabditis elegans
Exon72669   162   II: 13023908-13024069 Caenorhabditis elegans
Exon72673   194   II: 13025039-13025232 Caenorhabditis elegans
Exon72677   78   II: 13025451-13025528 Caenorhabditis elegans
Exon72681   125   II: 13025578-13025702 Caenorhabditis elegans
Exon72687   90   II: 13025755-13025844 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38F1A.10c.1 13014326 13025844 -1

1 Sequence

Length
3048

1 Sequence Ontology Term

Identifier Name Description
transcript