WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y81G3A.3b.1 Sequence Name  Y81G3A.3b.1
Length (nt)  5540   Chromosome Location  II: 13084169-13091501
Chromosome . Primary Identifier  II Chromosome Location . Start  13084169
Chromosome Location . End  13091501 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y81G3A.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013591 gcn-2 Y81G3A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y81G3A.3b Y81G3A.3b 5100   II: 13084169-13084297

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y81G3A.3b.1 13084169 13091501 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72812   129   II: 13084169-13084297 Caenorhabditis elegans
Exon72814   357   II: 13084346-13084702 Caenorhabditis elegans
Exon72816   162   II: 13084776-13084937 Caenorhabditis elegans
Exon72818   600   II: 13085045-13085644 Caenorhabditis elegans
Exon72820   142   II: 13085704-13085845 Caenorhabditis elegans
Exon72822   2135   II: 13085897-13088031 Caenorhabditis elegans
Exon72824   175   II: 13088083-13088257 Caenorhabditis elegans
Exon72826   689   II: 13088308-13088996 Caenorhabditis elegans
Exon72828   263   II: 13089885-13090147 Caenorhabditis elegans
Exon72829   283   II: 13090189-13090471 Caenorhabditis elegans
Exon72832   605   II: 13090897-13091501 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y81G3A.3b.1 13084169 13091501 1

1 Sequence

Length
5540

1 Sequence Ontology Term

Identifier Name Description
transcript