WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F15D4.1.1 Sequence Name  F15D4.1.1
Length (nt)  5229   Chromosome Location  II: 13200165-13215706
Chromosome . Primary Identifier  II Chromosome Location . Start  13200165
Chromosome Location . End  13215706 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F15D4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000274 btf-1 F15D4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F15D4.1 F15D4.1 4950   II: 13200171-13200299

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F15D4.1.1 13200165 13215706 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73023   135   II: 13200165-13200299 Caenorhabditis elegans
Exon73024   105   II: 13200673-13200777 Caenorhabditis elegans
Exon73025   195   II: 13200831-13201025 Caenorhabditis elegans
Exon73026   266   II: 13201843-13202108 Caenorhabditis elegans
Exon73027   217   II: 13203218-13203434 Caenorhabditis elegans
Exon73028   608   II: 13204540-13205147 Caenorhabditis elegans
Exon73029   294   II: 13205717-13206010 Caenorhabditis elegans
Exon73030   453   II: 13207027-13207479 Caenorhabditis elegans
Exon73031   400   II: 13208041-13208440 Caenorhabditis elegans
Exon73032   78   II: 13208490-13208567 Caenorhabditis elegans
Exon73033   881   II: 13209645-13210525 Caenorhabditis elegans
Exon73034   135   II: 13212858-13212992 Caenorhabditis elegans
Exon73035   751   II: 13213046-13213796 Caenorhabditis elegans
Exon73036   341   II: 13214948-13215288 Caenorhabditis elegans
Exon73037   370   II: 13215337-13215706 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F15D4.1.1 13200165 13215706 1

1 Sequence

Length
5229

1 Sequence Ontology Term

Identifier Name Description
transcript