WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48C3A.5d.1 Sequence Name  Y48C3A.5d.1
Length (nt)  1629   Chromosome Location  II: 13271076-13304090
Chromosome . Primary Identifier  II Chromosome Location . Start  13271076
Chromosome Location . End  13304090 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48C3A.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012989 Y48C3A.5 Y48C3A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48C3A.5d Y48C3A.5d 1629   II: 13271076-13271081

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48C3A.5d.1 13271076 13304090 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73073   6   II: 13271076-13271081 Caenorhabditis elegans
Exon73079   125   II: 13278175-13278299 Caenorhabditis elegans
Exon73082   230   II: 13279046-13279275 Caenorhabditis elegans
Exon73085   143   II: 13279626-13279768 Caenorhabditis elegans
Exon73101   99   II: 13299696-13299794 Caenorhabditis elegans
Exon73105   587   II: 13300511-13301097 Caenorhabditis elegans
Exon73111   125   II: 13302234-13302358 Caenorhabditis elegans
Exon73115   94   II: 13302702-13302795 Caenorhabditis elegans
Exon73119   114   II: 13303170-13303283 Caenorhabditis elegans
Exon73121   106   II: 13303985-13304090 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48C3A.5d.1 13271076 13304090 1

1 Sequence

Length
1629

1 Sequence Ontology Term

Identifier Name Description
transcript