WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48C3A.5b.1 Sequence Name  Y48C3A.5b.1
Length (nt)  2013   Chromosome Location  II: 13272634-13304090
Chromosome . Primary Identifier  II Chromosome Location . Start  13272634
Chromosome Location . End  13304090 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48C3A.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012989 Y48C3A.5 Y48C3A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48C3A.5b Y48C3A.5b 2013   II: 13272634-13272774

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48C3A.5b.1 13272634 13304090 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73075   141   II: 13272634-13272774 Caenorhabditis elegans
Exon73078   125   II: 13278175-13278299 Caenorhabditis elegans
Exon73081   230   II: 13279046-13279275 Caenorhabditis elegans
Exon73084   143   II: 13279626-13279768 Caenorhabditis elegans
Exon73100   99   II: 13299696-13299794 Caenorhabditis elegans
Exon73103   587   II: 13300511-13301097 Caenorhabditis elegans
Exon73106   105   II: 13301679-13301783 Caenorhabditis elegans
Exon73107   144   II: 13301832-13301975 Caenorhabditis elegans
Exon73109   125   II: 13302234-13302358 Caenorhabditis elegans
Exon73113   94   II: 13302702-13302795 Caenorhabditis elegans
Exon73117   114   II: 13303170-13303283 Caenorhabditis elegans
Exon73120   106   II: 13303985-13304090 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48C3A.5b.1 13272634 13304090 1

1 Sequence

Length
2013

1 Sequence Ontology Term

Identifier Name Description
transcript