WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48C3A.14a.1 Sequence Name  Y48C3A.14a.1
Length (nt)  2812   Chromosome Location  II: 13389761-13402016
Chromosome . Primary Identifier  II Chromosome Location . Start  13389761
Chromosome Location . End  13402016 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48C3A.14a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012995 top-3B Y48C3A.14 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48C3A.14a Y48C3A.14a 2610   II: 13389761-13389854

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48C3A.14a.1 13389761 13402016 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73210   94   II: 13389761-13389854 Caenorhabditis elegans
Exon73211   290   II: 13390654-13390943 Caenorhabditis elegans
Exon73212   456   II: 13392270-13392725 Caenorhabditis elegans
Exon73214   273   II: 13393397-13393669 Caenorhabditis elegans
Exon73216   332   II: 13394344-13394675 Caenorhabditis elegans
Exon73218   304   II: 13396051-13396354 Caenorhabditis elegans
Exon73221   297   II: 13397107-13397403 Caenorhabditis elegans
Exon73225   131   II: 13398682-13398812 Caenorhabditis elegans
Exon73228   199   II: 13399709-13399907 Caenorhabditis elegans
Exon73233   436   II: 13401581-13402016 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48C3A.14a.1 13389761 13402016 1

1 Sequence

Length
2812

1 Sequence Ontology Term

Identifier Name Description
transcript