WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48E1C.2a.1 Sequence Name  Y48E1C.2a.1
Length (nt)  1162   Chromosome Location  II: 13424549-13428970
Chromosome . Primary Identifier  II Chromosome Location . Start  13424549
Chromosome Location . End  13428970 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48E1C.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013015 Y48E1C.2 Y48E1C.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48E1C.2a Y48E1C.2a 1110   II: 13424549-13424682

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48E1C.2a.1 13424549 13428970 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73283   134   II: 13424549-13424682 Caenorhabditis elegans
Exon73285   90   II: 13424976-13425065 Caenorhabditis elegans
Exon73286   81   II: 13425113-13425193 Caenorhabditis elegans
Exon73288   298   II: 13426194-13426491 Caenorhabditis elegans
Exon73290   244   II: 13427500-13427743 Caenorhabditis elegans
Exon73292   315   II: 13428656-13428970 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48E1C.2a.1 13424549 13428970 1

1 Sequence

Length
1162

1 Sequence Ontology Term

Identifier Name Description
transcript