WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:Y54G9A.3a.2 Sequence Name  Y54G9A.3a.2
Length (nt)  2141   Chromosome Location  II: 13696282-13712931
Chromosome . Primary Identifier  II Chromosome Location . Start  13696282
Chromosome Location . End  13712931 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G9A.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002235 kqt-3 Y54G9A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G9A.3a Y54G9A.3a 1866   II: 13703878-13704000

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G9A.3a.2 13696282 13712931 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73648   88   II: 13696282-13696369 Caenorhabditis elegans
Exon73650   124   II: 13703877-13704000 Caenorhabditis elegans
Exon73654   216   II: 13708453-13708668 Caenorhabditis elegans
Exon73658   127   II: 13709024-13709150 Caenorhabditis elegans
Exon73662   139   II: 13709198-13709336 Caenorhabditis elegans
Exon73666   555   II: 13709721-13710275 Caenorhabditis elegans
Exon73670   390   II: 13711266-13711655 Caenorhabditis elegans
Exon73674   103   II: 13711739-13711841 Caenorhabditis elegans
Exon73680   399   II: 13712533-13712931 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G9A.3a.2 13696282 13712931 1

1 Sequence

Length
2141

1 Sequence Ontology Term

Identifier Name Description
transcript