WormMine: Gene WBGene00014310

• WormBase Gene ID: WBGene00014310
• Gene Name: F08G2.9
• Sequence Name: F08G2.9
• Organism: Caenorhabditis elegans
• Automated Description: Expressed widely.
• Biotype: SO:0001268
• Genetic Position: :±
• Length (nt): 185

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00014310

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F08G2.9	F08G2.9	185	II: 13835937-13836121

Other

0 CDSs

3 RNAi Result

• WBRNAi00003829
• WBRNAi00012925
• WBRNAi00107982

8 Allele

• gk963801
• gk963053
• gk962684
• gk962539
• WBVar01606198
• tm6892
• WBVar01577257
• WBVar01606197

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00014310
• Start: 13835937
• End: 13836121
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

8 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts depleted in purified oocyte P bodies comparing to in the whole animal.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_WholeAnimal_depleted
	Transcripts that showed significantly increased expression in sftb-1(cer6) deletion homozygous comparing to to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer6)_upregulated
	Potental DAF-12 target genes identified by ChIP-chip analysis performed on strain ALF4 [daf-12	Affymetrix TAS software that computed for each probe estimates of fold enrichment (in linear scale) over hybridization with input DNA. At the same time, TAS calculated for each probe a p-value by applying a Wilcoxon signed rank test. A threshold of 2.5 was selected, which corresponds to probe intensities approximately 2.5 times stronger on the ChIP array than on the Input array. Additional TAS threshold parameters were MinRun=180 bp, MaxGap=300 bp. TAS analysis showed that the selected threshold of 2.5 corresponds approximately to a p-value of 0.01.	WBPaper00040221:DAF-12_target_ALF4
	Transcripts that showed significantly increased expression in strain CER276 sftb1(cer39[Q552P, R643C,K718E]) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer39)_upregulated
	Transcripts that showed siginificantly decreased expression in nmad-1(ok3133) comparing to in N2 at 25 entigrade.	edgeR, FDR < 0.05, fold change > 2.	WBPaper00056997:nmad-1(ok3133)_downregulated_germline_25C
24 hours of exposure to rumen-derived extracellular vesicles	Top 5 transcripts that showed significantly increased expression after L4 animals were exposed to rumen-derived extracellular vesicles for 24 hours.	N.A.	WBPaper00065750:rumen-EVs_uprgulated

1 Expression Patterns

• Primary Identifier: Expr13248
• Pattern: The U2-3 reporter had undetectable expression inadults. Nevertheless, the U2-3 reporter is active in most, if not all, somatic cells in embryos and early larvae.

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00014310
• Start: 13835937
• End: 13836121
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 185

1 Sequence Ontology Term