WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014312 Gene Name  F08G2.11
Sequence Name  ? F08G2.11 Organism  Caenorhabditis elegans
Automated Description  Enriched in AFD based on RNA-seq studies. Is affected by dlc-1; sftb-1; and ogt-1 based on RNA-seq studies. Biotype  SO:0001268
Genetic Position  :± Length (nt)  ? 186
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014312

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F08G2.11 F08G2.11 186   II: 13852787-13852972
 

Other

0 CDSs

4 RNAi Result

WormBase ID
WBRNAi00012925
WBRNAi00107982
WBRNAi00030668
WBRNAi00073006

8 Allele

Public Name
gk963801
gk963053
gk962684
gk849347
gk615454
WBVar01606222
tm10016
WBVar01895570

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014312 13852787 13852972 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in sftb-1(cer6) deletion homozygous comparing to to in N2 animals at L4 larva stage. DESeq2, fold change > 2 WBPaper00058725:sftb-1(cer6)_upregulated
  Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing. DESeq2, fold change > 2,, p-value < 0.01 WBPaper00055334:DLC-1_interacting
Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage. Transcripts that showed significantly increased expression in AFD neurons comparing to in whole animals. DESeq2, fold change > 2, FDR < 0.05. WBPaper00065158:AFD_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014312 13852787 13852972 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
186

1 Sequence Ontology Term