WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014550 Gene Name  W07G1.9
Sequence Name  ? W07G1.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001268
Genetic Position  Length (nt)  ? 187
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014550

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:W07G1.9 W07G1.9 187   II: 13948972-13949158
 

Other

0 CDSs

2 RNAi Result

WormBase ID
WBRNAi00012925
WBRNAi00107982

16 Allele

Public Name
gk963801
gk963053
gk962684
WBVar02122794
WBVar02123754
WBVar02123372
WBVar02123669
WBVar02121739
WBVar02123500
WBVar02122928
WBVar02120657
WBVar02120818
WBVar02123575
WBVar02122112
WBVar02120963
WBVar02121860

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014550 13948972 13949158 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014550 13948972 13949158 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
187

1 Sequence Ontology Term