WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00044171 Gene Name  Y54E2A.13
Sequence Name  ? Y54E2A.13 Organism  Caenorhabditis elegans
Biotype  SO:0000336 Genetic Position 
Length (nt)  ? 315
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00044171

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

14 Allele

Public Name
gk963801
gk963053
gk962684
gk963297
gk923007
gk493610
gk162596
gk162595
gk502047
WBVar01937553
WBVar00232595
WBVar00235160
gk162594
WBVar02122371

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00044171 14786198 14786512 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_14786513..14791050   4538 II: 14786513-14791050 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  spermatogenesis-enriched Comparisons were made between genotypes by subtracting the mean log value of one ratio from another, and the significance of the difference was evaluated using Student t-test for two populations. For the fem-3(gf) versus fem-1(lf) direct comparison, authors performed the same analysis, except they used a Students t-test for one population. Author chose a combination of a twofold difference with a t value exceeding 99% confidence (P < 0.01), because these criteria allowed the inclusion of essentially all genes that had previously been identified as germline-enriched in a wt/glp-4 hermaphrodite comparison. Additionally, requiring a twofold difference reduced false positives, as the number of genes with two-fold difference and a P<0.01 only included ~100 genes more than with P < 0.001, and almost all genes showed germline expression by in situ hybridization. [cgc6390]:spermatogenesis-enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00044171 14786198 14786512 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
315

1 Sequence Ontology Term