WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53F4B.1.1 Sequence Name  Y53F4B.1.1
Length (nt)  1842   Chromosome Location  II: 14953852-14958213
Chromosome . Primary Identifier  II Chromosome Location . Start  14953852
Chromosome Location . End  14958213 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53F4B.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013149 Y53F4B.1 Y53F4B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53F4B.1 Y53F4B.1 1392   II: 14954278-14954307

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53F4B.1.1 14953852 14958213 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon76305   456   II: 14953852-14954307 Caenorhabditis elegans
Exon76306   112   II: 14954357-14954468 Caenorhabditis elegans
Exon76307   102   II: 14954568-14954669 Caenorhabditis elegans
Exon76308   135   II: 14954990-14955124 Caenorhabditis elegans
Exon76311   155   II: 14955380-14955534 Caenorhabditis elegans
Exon76312   78   II: 14955599-14955676 Caenorhabditis elegans
Exon76313   154   II: 14955873-14956026 Caenorhabditis elegans
Exon76314   104   II: 14956072-14956175 Caenorhabditis elegans
Exon76315   338   II: 14956969-14957306 Caenorhabditis elegans
Exon76316   49   II: 14957694-14957742 Caenorhabditis elegans
Exon76317   159   II: 14958055-14958213 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53F4B.1.1 14953852 14958213 -1

1 Sequence

Length
1842

1 Sequence Ontology Term

Identifier Name Description
transcript