WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53F4B.21.1 Sequence Name  Y53F4B.21.1
Length (nt)  3438   Chromosome Location  II: 15090180-15109008
Chromosome . Primary Identifier  II Chromosome Location . Start  15090180
Chromosome Location . End  15109008 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53F4B.21.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013167 wshc-4 Y53F4B.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53F4B.21 Y53F4B.21 3438   II: 15090180-15090320

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53F4B.21.1 15090180 15109008 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon76499   141   II: 15090180-15090320 Caenorhabditis elegans
Exon76500   163   II: 15091217-15091379 Caenorhabditis elegans
Exon76501   139   II: 15092382-15092520 Caenorhabditis elegans
Exon76502   138   II: 15092589-15092726 Caenorhabditis elegans
Exon76503   118   II: 15093645-15093762 Caenorhabditis elegans
Exon76504   106   II: 15094735-15094840 Caenorhabditis elegans
Exon76505   422   II: 15097309-15097730 Caenorhabditis elegans
Exon76506   346   II: 15099555-15099900 Caenorhabditis elegans
Exon76507   56   II: 15101244-15101299 Caenorhabditis elegans
Exon76508   89   II: 15101352-15101440 Caenorhabditis elegans
Exon76509   97   II: 15102022-15102118 Caenorhabditis elegans
Exon76510   96   II: 15102507-15102602 Caenorhabditis elegans
Exon76511   80   II: 15103104-15103183 Caenorhabditis elegans
Exon76512   101   II: 15103236-15103336 Caenorhabditis elegans
Exon76513   662   II: 15103995-15104656 Caenorhabditis elegans
Exon76515   530   II: 15107151-15107680 Caenorhabditis elegans
Exon76516   154   II: 15108855-15109008 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53F4B.21.1 15090180 15109008 1

1 Sequence

Length
3438

1 Sequence Ontology Term

Identifier Name Description
transcript