WormMine: Gene WBGene00044729

• WormBase Gene ID: WBGene00044729
• Gene Name: Y53F4B.46
• Sequence Name: Y53F4B.46
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by dpy-21 and flcn-1 based on RNA-seq and microarray studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 278

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00044729

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

10 Allele

• gk963801
• gk963053
• gk962684
• gk963297
• gk545173
• gk358987
• gk583627
• WBVar01563579
• gk692380
• gk898258

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00044729
• Start: 15117686
• End: 15117963
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrII_15117964..15118281
• Length (nt): 318
• Chromosome Location: II: 15117964-15118281
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage.	DESeq v1.6.3. Fold change > 1.5.	WBPaper00050370:dpy-21(e428)_L3_upregulated
	Transcripts that showed significantly depleted expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_depleted
	Transcripts that showed significantly increased expression in RB1035[flcn-1(ok975)] comparing to in N2 at young adult stage.	Agilent microarray raw data were processed and quantile normalized with the marray package from the Bioconductor project. Fold change statistics and Students t-test were used to create lists of candidates for differential gene expression.	WBPaper00042236:flcn-1(ok975)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00044729
• Start: 15117686
• End: 15117963
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 278

1 Sequence Ontology Term