WormMine: Gene WBGene00219840

• WormBase Gene ID: WBGene00219840
• Gene Name: C29F9.15
• Sequence Name: C29F9.15
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in somatic gonad precursor based on RNA-seq studies. Is affected by ogt-1; ilc-17.1; and mrps-5 based on RNA-seq and microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 131

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219840

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C29F9.15	C29F9.15	131	III: 115429-115559

Other

0 CDSs

2 RNAi Result

• WBRNAi00041497
• WBRNAi00006493

21 Allele

• gk962532
• gk964281
• WBVar02122373
• WBVar02124464
• WBVar01697987
• WBVar01697988
• WBVar02121864
• WBVar02120971
• WBVar02123215
• WBVar02123376
• WBVar02101113
• WBVar02122931
• WBVar02121400
• WBVar02123897
• gk890009
• gk5124
• WBVar02123035
• WBVar01563805
• gk709391
• WBVar02121153
• WBVar02122115

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219840
• Start: 115429
• End: 115559
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly higher expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc).	DESeq2, fold change >= 2, FDR <= 0.01.	WBPaper00056826:SGP_biased
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Genome-wide analysis of developmental and sex-regulated gene expression profile.	self-organizing map	cgc4489_group_14
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Transcripts that showed significantly increased expression in mrps-5(RNAi) comparing to in control animals.	Fold change > 4, p-value < 0.01	WBPaper00056330:mrps-5(RNAi)_upregulated
Bacteria infection: Burkholderia pseudomallei BpR15	Genes that showed increased expression in adult animals after 8 hour exposure to B. pseudomallei R15 vs. exposure to OP50	After array normalization, significance analysis of microarray was performed on data from individual time points (two class unpaired response) to identify genes with small but consistent changes. A false-discovery rate (FDR) of ~1% was used as criteria to consider a gene differentially regulated.Authors chose this particular FDR because it was the lowest FDR that did not significantly reduce the number of estimated true positives.	WBPaper00044091:Bpseudomallei_induced_8h
Bacteria infection: Burkholderia pseudomallei BpR15	Genes that showed increased expression in adult animals after 12 hour exposure to B. pseudomallei R15 vs. exposure to OP50	After array normalization, significance analysis of microarray was performed on data from individual time points (two class unpaired response) to identify genes with small but consistent changes. A false-discovery rate (FDR) of ~1% was used as criteria to consider a gene differentially regulated.Authors chose this particular FDR because it was the lowest FDR that did not significantly reduce the number of estimated true positives.	WBPaper00044091:Bpseudomallei_induced_12h

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219840
• Start: 115429
• End: 115559
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 131

1 Sequence Ontology Term