WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T17A3.1.1 Sequence Name  T17A3.1.1
Length (nt)  3252   Chromosome Location  III: 156824-163542
Chromosome . Primary Identifier  III Chromosome Location . Start  156824
Chromosome Location . End  163542 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T17A3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006894 ver-1 T17A3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T17A3.1 T17A3.1 3252   III: 156824-157012

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T17A3.1.1 156824 163542 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77041   189   III: 156824-157012 Caenorhabditis elegans
Exon77042   76   III: 157055-157130 Caenorhabditis elegans
Exon77043   620   III: 157328-157947 Caenorhabditis elegans
Exon77044   425   III: 158492-158916 Caenorhabditis elegans
Exon77045   561   III: 159012-159572 Caenorhabditis elegans
Exon77046   432   III: 160028-160459 Caenorhabditis elegans
Exon77047   194   III: 160504-160697 Caenorhabditis elegans
Exon77048   127   III: 160749-160875 Caenorhabditis elegans
Exon77049   214   III: 162130-162343 Caenorhabditis elegans
Exon77050   92   III: 162388-162479 Caenorhabditis elegans
Exon77051   210   III: 163177-163386 Caenorhabditis elegans
Exon77052   112   III: 163431-163542 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T17A3.1.1 156824 163542 1

1 Sequence

Length
3252

1 Sequence Ontology Term

Identifier Name Description
transcript