WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y50D7A.6.2 Sequence Name  Y50D7A.6.2
Length (nt)  2047   Chromosome Location  III: 209992-230450
Chromosome . Primary Identifier  III Chromosome Location . Start  209992
Chromosome Location . End  230450 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y50D7A.6.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002230 klp-20 Y50D7A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y50D7A.6 Y50D7A.6 1941   III: 221419-221556

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.6.2 209992 230450 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77180   72   III: 209992-210063 Caenorhabditis elegans
Exon77182   141   III: 221416-221556 Caenorhabditis elegans
Exon77187   115   III: 221618-221732 Caenorhabditis elegans
Exon77191   145   III: 222063-222207 Caenorhabditis elegans
Exon77195   111   III: 222884-222994 Caenorhabditis elegans
Exon77199   80   III: 223056-223135 Caenorhabditis elegans
Exon77203   323   III: 223192-223514 Caenorhabditis elegans
Exon77208   172   III: 223904-224075 Caenorhabditis elegans
Exon77212   208   III: 224126-224333 Caenorhabditis elegans
Exon77216   343   III: 225338-225680 Caenorhabditis elegans
Exon77220   174   III: 226829-227002 Caenorhabditis elegans
Exon77224   92   III: 227390-227481 Caenorhabditis elegans
Exon77228   49   III: 227527-227575 Caenorhabditis elegans
Exon77233   22   III: 230429-230450 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.6.2 209992 230450 1

1 Sequence

Length
2047

1 Sequence Ontology Term

Identifier Name Description
transcript