WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y50D7A.6.1 Sequence Name  Y50D7A.6.1
Length (nt)  2152   Chromosome Location  III: 221416-228815
Chromosome . Primary Identifier  III Chromosome Location . Start  221416
Chromosome Location . End  228815 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y50D7A.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002230 klp-20 Y50D7A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y50D7A.6 Y50D7A.6 1941   III: 221419-221556

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.6.1 221416 228815 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77185   141   III: 221416-221556 Caenorhabditis elegans
Exon77186   115   III: 221618-221732 Caenorhabditis elegans
Exon77190   145   III: 222063-222207 Caenorhabditis elegans
Exon77194   111   III: 222884-222994 Caenorhabditis elegans
Exon77198   80   III: 223056-223135 Caenorhabditis elegans
Exon77202   323   III: 223192-223514 Caenorhabditis elegans
Exon77207   172   III: 223904-224075 Caenorhabditis elegans
Exon77211   208   III: 224126-224333 Caenorhabditis elegans
Exon77215   343   III: 225338-225680 Caenorhabditis elegans
Exon77219   174   III: 226829-227002 Caenorhabditis elegans
Exon77223   92   III: 227390-227481 Caenorhabditis elegans
Exon77227   49   III: 227527-227575 Caenorhabditis elegans
Exon77231   199   III: 228617-228815 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.6.1 221416 228815 1

1 Sequence

Length
2152

1 Sequence Ontology Term

Identifier Name Description
transcript