WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y50D7A.4.1 Sequence Name  Y50D7A.4.1
Length (nt)  3572   Chromosome Location  III: 235844-254383
Chromosome . Primary Identifier  III Chromosome Location . Start  235844
Chromosome Location . End  254383 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y50D7A.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021754 hpo-29 Y50D7A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y50D7A.4 Y50D7A.4 2559   III: 235850-235924

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.4.1 235844 254383 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77202   81   III: 235844-235924 Caenorhabditis elegans
Exon77203   85   III: 235978-236062 Caenorhabditis elegans
Exon77206   263   III: 237750-238012 Caenorhabditis elegans
Exon77207   135   III: 239099-239233 Caenorhabditis elegans
Exon77209   271   III: 240567-240837 Caenorhabditis elegans
Exon77210   455   III: 242729-243183 Caenorhabditis elegans
Exon77211   282   III: 244684-244965 Caenorhabditis elegans
Exon77212   354   III: 246698-247051 Caenorhabditis elegans
Exon77214   220   III: 248904-249123 Caenorhabditis elegans
Exon77215   144   III: 250698-250841 Caenorhabditis elegans
Exon77216   161   III: 251756-251916 Caenorhabditis elegans
Exon77217   1121   III: 253263-254383 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.4.1 235844 254383 1

1 Sequence

Length
3572

1 Sequence Ontology Term

Identifier Name Description
transcript