WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y50D7A.2.1 Sequence Name  Y50D7A.2.1
Length (nt)  2411   Chromosome Location  III: 265090-283009
Chromosome . Primary Identifier  III Chromosome Location . Start  265090
Chromosome Location . End  283009 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y50D7A.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021752 xpd-1 Y50D7A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y50D7A.2 Y50D7A.2 2268   III: 265097-265201

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.2.1 265090 283009 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77232   112   III: 265090-265201 Caenorhabditis elegans
Exon77233   130   III: 265611-265740 Caenorhabditis elegans
Exon77234   290   III: 266235-266524 Caenorhabditis elegans
Exon77235   252   III: 268536-268787 Caenorhabditis elegans
Exon77236   156   III: 271744-271899 Caenorhabditis elegans
Exon77237   258   III: 276698-276955 Caenorhabditis elegans
Exon77238   166   III: 277465-277630 Caenorhabditis elegans
Exon77240   280   III: 278888-279167 Caenorhabditis elegans
Exon77241   188   III: 280284-280471 Caenorhabditis elegans
Exon77242   97   III: 280640-280736 Caenorhabditis elegans
Exon77243   106   III: 281455-281560 Caenorhabditis elegans
Exon77244   376   III: 282634-283009 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.2.1 265090 283009 1

1 Sequence

Length
2411

1 Sequence Ontology Term

Identifier Name Description
transcript