WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y50D7A.1a.1 Sequence Name  Y50D7A.1a.1
Length (nt)  2349   Chromosome Location  III: 292640-314508
Chromosome . Primary Identifier  III Chromosome Location . Start  292640
Chromosome Location . End  314508 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y50D7A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021751 Y50D7A.1 Y50D7A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y50D7A.1a Y50D7A.1a 1944   III: 292650-292719

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.1a.1 292640 314508 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77255   80   III: 292640-292719 Caenorhabditis elegans
Exon77266   82   III: 299560-299641 Caenorhabditis elegans
Exon77267   316   III: 299686-300001 Caenorhabditis elegans
Exon77268   147   III: 300599-300745 Caenorhabditis elegans
Exon77270   231   III: 305648-305878 Caenorhabditis elegans
Exon77272   98   III: 306590-306687 Caenorhabditis elegans
Exon77274   325   III: 307135-307459 Caenorhabditis elegans
Exon77276   197   III: 309675-309871 Caenorhabditis elegans
Exon77278   173   III: 312805-312977 Caenorhabditis elegans
Exon77280   139   III: 313655-313793 Caenorhabditis elegans
Exon77283   561   III: 313948-314508 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.1a.1 292640 314508 1

1 Sequence

Length
2349

1 Sequence Ontology Term

Identifier Name Description
transcript