WormMine: Gene WBGene00219745

• WormBase Gene ID: WBGene00219745
• Gene Name: linc-90
• Sequence Name: W07B3.3
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AFD and sensory neurons based on RNA-seq studies. Is affected by several genes including dlc-1; ilc-17.1; and ogt-1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: III :-26.892±
• Length (nt): 3181

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219745

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:W07B3.3	W07B3.3	412	III: 352222-355402

Other

0 CDSs

0 RNAi Result

71 Allele

• gk962532
• gk964281
• gk963761
• WBVar02069377
• ttTi43268
• WBVar02012579
• WBVar02012577
• WBVar01443033
• WBVar02012578
• WBVar01443032
• WBVar01389006
• gk606282
• WBVar01768394
• gk606281
• WBVar01768395
• WBVar01443034
• WBVar01902930
• WBVar01902931
• WBVar01902929
• gk164456
• gk164455
• gk164458
• gk164457
• gk164454
• gk164453
• ttTi19713
• WBVar01893044
• gk164459
• WBVar01564036
• WBVar01564037

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219745
• Start: 352222
• End: 355402
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_355403..365948
• Length (nt): 10546
• Chromosome Location: III: 355403-365948
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
	Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.	DESeq2, fold change > 2,, p-value < 0.01	WBPaper00055334:DLC-1_interacting
	Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_enriched
	Transcripts that showed significantly increased expression in AFD neuron cells comparing to in whole animal, according to dissected single neuron RNASeq analysis.	Fold change >= 4.	WBPaper00050344:AFD-neuron_enriched
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_normal

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219745
• Start: 352222
• End: 355402
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 3181

1 Sequence Ontology Term