WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55B1BM.1b.1 Sequence Name  Y55B1BM.1b.1
Length (nt)  1877   Chromosome Location  III: 408126-418744
Chromosome . Primary Identifier  III Chromosome Location . Start  408126
Chromosome Location . End  418744 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55B1BM.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021910 stim-1 Y55B1BM.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55B1BM.1b Y55B1BM.1b 1533   III: 408418-408574

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1BM.1b.1 408126 418744 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77470   449   III: 408126-408574 Caenorhabditis elegans
Exon77473   122   III: 408913-409034 Caenorhabditis elegans
Exon77475   83   III: 409914-409996 Caenorhabditis elegans
Exon77479   98   III: 410548-410645 Caenorhabditis elegans
Exon77481   141   III: 411249-411389 Caenorhabditis elegans
Exon77484   180   III: 412091-412270 Caenorhabditis elegans
Exon77487   158   III: 413879-414036 Caenorhabditis elegans
Exon77490   243   III: 416948-417190 Caenorhabditis elegans
Exon77493   144   III: 417604-417747 Caenorhabditis elegans
Exon77497   125   III: 418089-418213 Caenorhabditis elegans
Exon77500   134   III: 418611-418744 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1BM.1b.1 408126 418744 -1

1 Sequence

Length
1877

1 Sequence Ontology Term

Identifier Name Description
transcript