WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F10C5.2.1 Sequence Name  F10C5.2.1
Length (nt)  1963   Chromosome Location  III: 472317-475349
Chromosome . Primary Identifier  III Chromosome Location . Start  472317
Chromosome Location . End  475349 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F10C5.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017328 nemp-1 F10C5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F10C5.2 F10C5.2 1680   III: 472333-472411

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F10C5.2.1 472317 475349 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77570   95   III: 472317-472411 Caenorhabditis elegans
Exon77571   155   III: 472459-472613 Caenorhabditis elegans
Exon77572   83   III: 472663-472745 Caenorhabditis elegans
Exon77573   83   III: 473095-473177 Caenorhabditis elegans
Exon77574   167   III: 473231-473397 Caenorhabditis elegans
Exon77575   524   III: 473459-473982 Caenorhabditis elegans
Exon77576   219   III: 474447-474665 Caenorhabditis elegans
Exon77577   637   III: 474713-475349 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F10C5.2.1 472317 475349 1

1 Sequence

Length
1963

1 Sequence Ontology Term

Identifier Name Description
transcript