WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55B1AR.2a.1 Sequence Name  Y55B1AR.2a.1
Length (nt)  2351   Chromosome Location  III: 587215-598117
Chromosome . Primary Identifier  III Chromosome Location . Start  587215
Chromosome Location . End  598117 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55B1AR.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021906 Y55B1AR.2 Y55B1AR.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55B1AR.2a Y55B1AR.2a 1788   III: 588267-588372

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1AR.2a.1 587215 598117 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77750   528   III: 587215-587742 Caenorhabditis elegans
Exon77751   129   III: 588244-588372 Caenorhabditis elegans
Exon77755   241   III: 591389-591629 Caenorhabditis elegans
Exon77759   178   III: 591966-592143 Caenorhabditis elegans
Exon77763   225   III: 593371-593595 Caenorhabditis elegans
Exon77766   197   III: 593927-594123 Caenorhabditis elegans
Exon77770   645   III: 595249-595893 Caenorhabditis elegans
Exon77773   115   III: 596646-596760 Caenorhabditis elegans
Exon77777   93   III: 598025-598117 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1AR.2a.1 587215 598117 -1

1 Sequence

Length
2351

1 Sequence Ontology Term

Identifier Name Description
transcript