WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T17H7.4d.1 Sequence Name  T17H7.4d.1
Length (nt)  5130   Chromosome Location  III: 727208-738978
Chromosome . Primary Identifier  III Chromosome Location . Start  727208
Chromosome Location . End  738978 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T17H7.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003936 pat-12 T17H7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T17H7.4d T17H7.4d 3093   III: 732353-732532

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T17H7.4d.1 727208 738978 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon78005   498   III: 727208-727705 Caenorhabditis elegans
Exon78019   117   III: 727948-728064 Caenorhabditis elegans
Exon78032   310   III: 728117-728426 Caenorhabditis elegans
Exon78047   163   III: 728882-729044 Caenorhabditis elegans
Exon78062   101   III: 729093-729193 Caenorhabditis elegans
Exon78074   141   III: 729318-729458 Caenorhabditis elegans
Exon78083   106   III: 729580-729685 Caenorhabditis elegans
Exon78098   159   III: 729986-730144 Caenorhabditis elegans
Exon78126   87   III: 731532-731618 Caenorhabditis elegans
Exon78136   129   III: 731676-731804 Caenorhabditis elegans
Exon78147   21   III: 731906-731926 Caenorhabditis elegans
Exon78164   385   III: 732148-732532 Caenorhabditis elegans
Exon78171   306   III: 732583-732888 Caenorhabditis elegans
Exon78179   135   III: 732940-733074 Caenorhabditis elegans
Exon78187   99   III: 733290-733388 Caenorhabditis elegans
Exon78195   1866   III: 733435-735300 Caenorhabditis elegans
Exon78202   270   III: 735358-735627 Caenorhabditis elegans
Exon78209   87   III: 737594-737680 Caenorhabditis elegans
Exon78216   150   III: 738829-738978 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T17H7.4d.1 727208 738978 -1

1 Sequence

Length
5130

1 Sequence Ontology Term

Identifier Name Description
transcript