WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T17H7.4g.1 Sequence Name  T17H7.4g.1
Length (nt)  2426   Chromosome Location  III: 727215-746693
Chromosome . Primary Identifier  III Chromosome Location . Start  727215
Chromosome Location . End  746693 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T17H7.4g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003936 pat-12 T17H7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T17H7.4g T17H7.4g 1128   III: 727639-727705

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T17H7.4g.1 727215 746693 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon78011   491   III: 727215-727705 Caenorhabditis elegans
Exon78022   117   III: 727948-728064 Caenorhabditis elegans
Exon78035   310   III: 728117-728426 Caenorhabditis elegans
Exon78052   163   III: 728882-729044 Caenorhabditis elegans
Exon78067   101   III: 729093-729193 Caenorhabditis elegans
Exon78088   106   III: 729580-729685 Caenorhabditis elegans
Exon78103   159   III: 729986-730144 Caenorhabditis elegans
Exon78129   87   III: 731532-731618 Caenorhabditis elegans
Exon78139   129   III: 731676-731804 Caenorhabditis elegans
Exon78153   21   III: 731906-731926 Caenorhabditis elegans
Exon78226   21   III: 739327-739347 Caenorhabditis elegans
Exon78234   99   III: 739660-739758 Caenorhabditis elegans
Exon78242   99   III: 739808-739906 Caenorhabditis elegans
Exon78250   135   III: 739955-740089 Caenorhabditis elegans
Exon78261   198   III: 742985-743182 Caenorhabditis elegans
Exon78272   116   III: 746452-746567 Caenorhabditis elegans
Exon78275   74   III: 746620-746693 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T17H7.4g.1 727215 746693 -1

1 Sequence

Length
2426

1 Sequence Ontology Term

Identifier Name Description
transcript