WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0412.3b.1 Sequence Name  B0412.3b.1
Length (nt)  2460   Chromosome Location  III: 797152-809360
Chromosome . Primary Identifier  III Chromosome Location . Start  797152
Chromosome Location . End  809360 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0412.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015173 trpp-11 B0412.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0412.3b B0412.3b 2460   III: 797152-797443

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0412.3b.1 797152 809360 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon78384   292   III: 797152-797443 Caenorhabditis elegans
Exon78387   254   III: 797769-798022 Caenorhabditis elegans
Exon78390   294   III: 798338-798631 Caenorhabditis elegans
Exon78392   188   III: 799587-799774 Caenorhabditis elegans
Exon78394   306   III: 800634-800939 Caenorhabditis elegans
Exon78396   259   III: 801367-801625 Caenorhabditis elegans
Exon78399   334   III: 802955-803288 Caenorhabditis elegans
Exon78402   109   III: 803332-803440 Caenorhabditis elegans
Exon78405   160   III: 806107-806266 Caenorhabditis elegans
Exon78408   63   III: 806513-806575 Caenorhabditis elegans
Exon78412   98   III: 807904-808001 Caenorhabditis elegans
Exon78417   70   III: 808053-808122 Caenorhabditis elegans
Exon78421   33   III: 809328-809360 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0412.3b.1 797152 809360 1

1 Sequence

Length
2460

1 Sequence Ontology Term

Identifier Name Description
transcript