WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00306002 Gene Name  T24C4.10
Sequence Name  ? T24C4.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by ash-2 based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  III:± Length (nt)  ? 1443
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00306002

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T24C4.10.1 T24C4.10.1 749   III: 889801-891243
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T24C4.10 T24C4.10 456   III: 889955-890130

0 RNAi Result

44 Allele

Public Name
gk963623
gk962532
gk964281
gk964448
gk395442
gk391951
gk719011
gk320330
gk462716
gk376389
gk345644
gk486269
gk694725
gk520434
gk478406
gk825299
WBVar00032248
WBVar01769374
WBVar01769373
WBVar01769372
WBVar01506190
WBVar01506187
WBVar01506188
WBVar01506189
WBVar01389728
WBVar00095486
WBVar00095487
WBVar00007341
WBVar00007346
WBVar00007331

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00306002 889801 891243 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_886794..889800   3007 III: 886794-889800 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ash-2(RNAi) comparing to in wild type animals injected with vector. Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed. WBPaper00066232:ash-2(RNAi)_downregulated_WT

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00306002 889801 891243 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1443

1 Sequence Ontology Term