WormMine: Gene WBGene00306002

• WormBase Gene ID: WBGene00306002
• Gene Name: T24C4.10
• Sequence Name: T24C4.10
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by ash-2 based on RNA-seq studies.
• Biotype: SO:0001217
• Genetic Position: III:±
• Length (nt): 1443

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00306002

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T24C4.10.1	T24C4.10.1	749	III: 889801-891243

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:T24C4.10	T24C4.10	456	III: 889955-890130

0 RNAi Result

44 Allele

• gk963623
• gk962532
• gk964281
• gk964448
• gk395442
• gk391951
• gk719011
• gk320330
• gk462716
• gk376389
• gk345644
• gk486269
• gk694725
• gk520434
• gk478406
• gk825299
• WBVar00032248
• WBVar01769374
• WBVar01769373
• WBVar01769372
• WBVar01506190
• WBVar01506187
• WBVar01506188
• WBVar01506189
• WBVar01389728
• WBVar00095486
• WBVar00095487
• WBVar00007341
• WBVar00007346
• WBVar00007331

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00306002
• Start: 889801
• End: 891243
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_886794..889800
• Length (nt): 3007
• Chromosome Location: III: 886794-889800
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Bacteria infection: Staphylococcus aureus	Transcripts that showed significantly increased expression in animals infected by the widespread animal pathogen, Staphylococcus aureus, comparing to animals not infected by pathogen.	DeSeq2 (v. 1.42.0), Wald analyses testing against a null hypothesis of < |1.5|-fold change in gene expression between treatments (BenjaminiHochberg adjusted false detection rate of p <= 0.05.	WBPaper00067479:Pathogen_vs_control_upregulated
	Transcripts that showed significantly decreased expression in ash-2(RNAi) comparing to in wild type animals injected with vector.	Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed.	WBPaper00066232:ash-2(RNAi)_downregulated_WT
Bacteria infection: Staphylococcus aureus	Transcripts that showed significantly increased expression in animals experimentally colonised by a wild microbiota community and infected by the widespread animal pathogen, Staphylococcus aureus, comparing to animals not colonized by microbiota and not infected by pathogen.	DeSeq2 (v. 1.42.0), Wald analyses testing against a null hypothesis of < |1.5|-fold change in gene expression between treatments (BenjaminiHochberg adjusted false detection rate of p <= 0.05.	WBPaper00067479:Microbiota-Pathogen_vs_control_upregulated
Bacteria infection: Staphylococcus aureus	Transcripts that showed significantly increased expression in animals experimentally colonised by a wild microbiota community and infected by the widespread animal pathogen, Staphylococcus aureus, comparing to animals colonized by microbiota but not infected by pathogen.	DeSeq2 (v. 1.42.0), Wald analyses testing against a null hypothesis of < |1.5|-fold change in gene expression between treatments (BenjaminiHochberg adjusted false detection rate of p <= 0.05.	WBPaper00067479:Microbiota-Pathogen_vs_Microbiota_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00306002
• Start: 889801
• End: 891243
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1443

1 Sequence Ontology Term