WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71D11A.1a.1 Sequence Name  Y71D11A.1a.1
Length (nt)  8920   Chromosome Location  III: 1152044-1181147
Chromosome . Primary Identifier  III Chromosome Location . Start  1152044
Chromosome Location . End  1181147 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71D11A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022103 cdh-12 Y71D11A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71D11A.1a Y71D11A.1a 8682   III: 1152044-1152107

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71D11A.1a.1 1152044 1181147 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon79144   64   III: 1152044-1152107 Caenorhabditis elegans
Exon79145   161   III: 1152761-1152921 Caenorhabditis elegans
Exon79146   333   III: 1153419-1153751 Caenorhabditis elegans
Exon79147   159   III: 1154550-1154708 Caenorhabditis elegans
Exon79148   513   III: 1154772-1155284 Caenorhabditis elegans
Exon79149   306   III: 1157010-1157315 Caenorhabditis elegans
Exon79150   1107   III: 1157959-1159065 Caenorhabditis elegans
Exon79152   117   III: 1160350-1160466 Caenorhabditis elegans
Exon79156   132   III: 1164037-1164168 Caenorhabditis elegans
Exon79158   165   III: 1164509-1164673 Caenorhabditis elegans
Exon79162   217   III: 1164935-1165151 Caenorhabditis elegans
Exon79164   292   III: 1165449-1165740 Caenorhabditis elegans
Exon79166   346   III: 1166064-1166409 Caenorhabditis elegans
Exon79169   384   III: 1167109-1167492 Caenorhabditis elegans
Exon79171   117   III: 1167555-1167671 Caenorhabditis elegans
Exon79174   483   III: 1168950-1169432 Caenorhabditis elegans
Exon79176   638   III: 1169967-1170604 Caenorhabditis elegans
Exon79178   1744   III: 1171665-1173408 Caenorhabditis elegans
Exon79184   178   III: 1176995-1177172 Caenorhabditis elegans
Exon79186   138   III: 1177217-1177354 Caenorhabditis elegans
Exon79188   452   III: 1177711-1178162 Caenorhabditis elegans
Exon79190   317   III: 1178914-1179230 Caenorhabditis elegans
Exon79192   153   III: 1179601-1179753 Caenorhabditis elegans
Exon79194   121   III: 1180677-1180797 Caenorhabditis elegans
Exon79197   283   III: 1180865-1181147 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71D11A.1a.1 1152044 1181147 1

1 Sequence

Length
8920

1 Sequence Ontology Term

Identifier Name Description
transcript