WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71D11A.1a.1 Sequence Name  Y71D11A.1a.1
Length (nt)  8920   Chromosome Location  III: 1152044-1181147
Chromosome . Primary Identifier  III Chromosome Location . Start  1152044
Chromosome Location . End  1181147 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71D11A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022103 cdh-12 Y71D11A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71D11A.1a Y71D11A.1a 8682   III: 1152044-1152107

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71D11A.1a.1 1152044 1181147 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon79174   64   III: 1152044-1152107 Caenorhabditis elegans
Exon79175   161   III: 1152761-1152921 Caenorhabditis elegans
Exon79176   333   III: 1153419-1153751 Caenorhabditis elegans
Exon79177   159   III: 1154550-1154708 Caenorhabditis elegans
Exon79178   513   III: 1154772-1155284 Caenorhabditis elegans
Exon79179   306   III: 1157010-1157315 Caenorhabditis elegans
Exon79180   1107   III: 1157959-1159065 Caenorhabditis elegans
Exon79182   117   III: 1160350-1160466 Caenorhabditis elegans
Exon79186   132   III: 1164037-1164168 Caenorhabditis elegans
Exon79188   165   III: 1164509-1164673 Caenorhabditis elegans
Exon79192   217   III: 1164935-1165151 Caenorhabditis elegans
Exon79194   292   III: 1165449-1165740 Caenorhabditis elegans
Exon79196   346   III: 1166064-1166409 Caenorhabditis elegans
Exon79199   384   III: 1167109-1167492 Caenorhabditis elegans
Exon79201   117   III: 1167555-1167671 Caenorhabditis elegans
Exon79204   483   III: 1168950-1169432 Caenorhabditis elegans
Exon79206   638   III: 1169967-1170604 Caenorhabditis elegans
Exon79208   1744   III: 1171665-1173408 Caenorhabditis elegans
Exon79214   178   III: 1176995-1177172 Caenorhabditis elegans
Exon79216   138   III: 1177217-1177354 Caenorhabditis elegans
Exon79218   452   III: 1177711-1178162 Caenorhabditis elegans
Exon79220   317   III: 1178914-1179230 Caenorhabditis elegans
Exon79222   153   III: 1179601-1179753 Caenorhabditis elegans
Exon79224   121   III: 1180677-1180797 Caenorhabditis elegans
Exon79227   283   III: 1180865-1181147 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71D11A.1a.1 1152044 1181147 1

1 Sequence

Length
8920

1 Sequence Ontology Term

Identifier Name Description
transcript