WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y82E9BR.11.1 Sequence Name  Y82E9BR.11.1
Length (nt)  645   Chromosome Location  III: 1376945-1378003
Chromosome . Primary Identifier  III Chromosome Location . Start  1376945
Chromosome Location . End  1378003 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y82E9BR.11.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022344 pals-40 Y82E9BR.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y82E9BR.11 Y82E9BR.11 645   III: 1376945-1377154

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y82E9BR.11.1 1376945 1378003 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

3 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon79524   210   III: 1376945-1377154 Caenorhabditis elegans
Exon79525   303   III: 1377389-1377691 Caenorhabditis elegans
Exon79526   132   III: 1377872-1378003 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y82E9BR.11.1 1376945 1378003 -1

1 Sequence

Length
645

1 Sequence Ontology Term

Identifier Name Description
transcript