WormMine: Gene WBGene00195737

• WormBase Gene ID: WBGene00195737
• Gene Name: Y82E9BR.27
• Sequence Name: Y82E9BR.27
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by cep-1; nhr-86; and ilc-17.1 based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 217

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00195737

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y82E9BR.27	Y82E9BR.27	217	III: 1418845-1419061

Other

0 CDSs

0 RNAi Result

21 Allele

• gk963623
• gk962532
• gk964281
• gk964019
• gk964018
• WBVar01324497
• WBVar01324496
• WBVar01324498
• WBVar01578421
• WBVar01256942
• gk166627
• WBVar00019456
• WBVar01401177
• WBVar00019461
• gk540683
• WBVar00019466
• WBVar00560295
• tm7313
• WBVar00560296
• WBVar00038643
• WBVar00038648

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00195737
• Start: 1418845
• End: 1419061
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_1419062..1419195
• Length (nt): 134
• Chromosome Location: III: 1419062-1419195
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
Fungi infection: Fusarium oxysporum	Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours.	The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed.	WBPaper00053368:F.oxysporum_regulated
	ncRNAs with significantly decreased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_downregulated_UV
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_normal
	Promoters regions that bind with NHR-86 according to ChIP-Seq using NHR-86-GFP protein.	N.A.	WBPaper00056073:NHR-86_interacting_promoter

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00195737
• Start: 1418845
• End: 1419061
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 217

1 Sequence Ontology Term