WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y82E9BR.17a.1 Sequence Name  Y82E9BR.17a.1
Length (nt)  1584   Chromosome Location  III: 1447494-1455774
Chromosome . Primary Identifier  III Chromosome Location . Start  1447494
Chromosome Location . End  1455774 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y82E9BR.17a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022349 Y82E9BR.17 Y82E9BR.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y82E9BR.17a Y82E9BR.17a 1455   III: 1447606-1447675

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y82E9BR.17a.1 1447494 1455774 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon79624   182   III: 1447494-1447675 Caenorhabditis elegans
Exon79632   99   III: 1449975-1450073 Caenorhabditis elegans
Exon79639   233   III: 1450118-1450350 Caenorhabditis elegans
Exon79646   77   III: 1450396-1450472 Caenorhabditis elegans
Exon79651   70   III: 1450633-1450702 Caenorhabditis elegans
Exon79656   60   III: 1450753-1450812 Caenorhabditis elegans
Exon79661   73   III: 1450857-1450929 Caenorhabditis elegans
Exon79665   129   III: 1451920-1452048 Caenorhabditis elegans
Exon79669   56   III: 1452094-1452149 Caenorhabditis elegans
Exon79673   40   III: 1452439-1452478 Caenorhabditis elegans
Exon79676   128   III: 1453046-1453173 Caenorhabditis elegans
Exon79679   176   III: 1454226-1454401 Caenorhabditis elegans
Exon79682   94   III: 1454489-1454582 Caenorhabditis elegans
Exon79685   78   III: 1454631-1454708 Caenorhabditis elegans
Exon79688   89   III: 1455686-1455774 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y82E9BR.17a.1 1447494 1455774 -1

1 Sequence

Length
1584

1 Sequence Ontology Term

Identifier Name Description
transcript