WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y82E9BR.17b.1 Sequence Name  Y82E9BR.17b.1
Length (nt)  1623   Chromosome Location  III: 1447500-1455774
Chromosome . Primary Identifier  III Chromosome Location . Start  1447500
Chromosome Location . End  1455774 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y82E9BR.17b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022349 Y82E9BR.17 Y82E9BR.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y82E9BR.17b Y82E9BR.17b 306   III: 1447606-1447675

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y82E9BR.17b.1 1447500 1455774 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon79627   176   III: 1447500-1447675 Caenorhabditis elegans
Exon79633   99   III: 1449975-1450073 Caenorhabditis elegans
Exon79644   355   III: 1450118-1450472 Caenorhabditis elegans
Exon79652   70   III: 1450633-1450702 Caenorhabditis elegans
Exon79657   60   III: 1450753-1450812 Caenorhabditis elegans
Exon79662   73   III: 1450857-1450929 Caenorhabditis elegans
Exon79666   129   III: 1451920-1452048 Caenorhabditis elegans
Exon79670   56   III: 1452094-1452149 Caenorhabditis elegans
Exon79674   40   III: 1452439-1452478 Caenorhabditis elegans
Exon79677   128   III: 1453046-1453173 Caenorhabditis elegans
Exon79680   176   III: 1454226-1454401 Caenorhabditis elegans
Exon79683   94   III: 1454489-1454582 Caenorhabditis elegans
Exon79686   78   III: 1454631-1454708 Caenorhabditis elegans
Exon79689   89   III: 1455686-1455774 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y82E9BR.17b.1 1447500 1455774 -1

1 Sequence

Length
1623

1 Sequence Ontology Term

Identifier Name Description
transcript