WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M01G5.5.1 Sequence Name  M01G5.5.1
Length (nt)  2466   Chromosome Location  III: 1519962-1532827
Chromosome . Primary Identifier  III Chromosome Location . Start  1519962
Chromosome Location . End  1532827 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01G5.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004905 snf-6 M01G5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M01G5.5 M01G5.5 2145   III: 1520224-1520373

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M01G5.5.1 1519962 1532827 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon79725   412   III: 1519962-1520373 Caenorhabditis elegans
Exon79726   354   III: 1521583-1521936 Caenorhabditis elegans
Exon79727   544   III: 1523152-1523695 Caenorhabditis elegans
Exon79729   239   III: 1525174-1525412 Caenorhabditis elegans
Exon79731   133   III: 1526413-1526545 Caenorhabditis elegans
Exon79732   151   III: 1528094-1528244 Caenorhabditis elegans
Exon79733   145   III: 1528301-1528445 Caenorhabditis elegans
Exon79734   176   III: 1529819-1529994 Caenorhabditis elegans
Exon79735   60   III: 1531772-1531831 Caenorhabditis elegans
Exon79736   94   III: 1532192-1532285 Caenorhabditis elegans
Exon79737   158   III: 1532670-1532827 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M01G5.5.1 1519962 1532827 -1

1 Sequence

Length
2466

1 Sequence Ontology Term

Identifier Name Description
transcript