WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y22D7AL.8a.1 Sequence Name  Y22D7AL.8a.1
Length (nt)  1666   Chromosome Location  III: 1583155-1601144
Chromosome . Primary Identifier  III Chromosome Location . Start  1583155
Chromosome Location . End  1601144 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y22D7AL.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004894 sms-3 Y22D7AL.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y22D7AL.8a Y22D7AL.8a 1023   III: 1583469-1583501

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y22D7AL.8a.1 1583155 1601144 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon79868   347   III: 1583155-1583501 Caenorhabditis elegans
Exon79877   262   III: 1584627-1584888 Caenorhabditis elegans
Exon79888   224   III: 1585847-1586070 Caenorhabditis elegans
Exon79896   254   III: 1587809-1588062 Caenorhabditis elegans
Exon79904   292   III: 1589153-1589444 Caenorhabditis elegans
Exon79916   206   III: 1599267-1599472 Caenorhabditis elegans
Exon79920   81   III: 1601064-1601144 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y22D7AL.8a.1 1583155 1601144 -1

1 Sequence

Length
1666

1 Sequence Ontology Term

Identifier Name Description
transcript