WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y39A3CL.2 Sequence Name  Y39A3CL.2
Length (nt)  3831   Chromosome Location  III: 1789084-1789454
Chromosome . Primary Identifier  III Chromosome Location . Start  1789084
Chromosome Location . End  1789454
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3CL.2

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE50987 RIMB-1 138.6 1276 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00056143
WBRNAi00007074

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y39A3CL.2 1789084 1789454 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006513 rimb-1 Y39A3CL.2 Caenorhabditis elegans

19 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y39A3CL.2 1789084 1789454 1
CDS:Y39A3CL.2 1790789 1790918 1
CDS:Y39A3CL.2 1791090 1791162 1
CDS:Y39A3CL.2 1792719 1792870 1
CDS:Y39A3CL.2 1793639 1793753 1
CDS:Y39A3CL.2 1794120 1794268 1
CDS:Y39A3CL.2 1795270 1795393 1
CDS:Y39A3CL.2 1798660 1798836 1
CDS:Y39A3CL.2 1799508 1799780 1
CDS:Y39A3CL.2 1800254 1800485 1
CDS:Y39A3CL.2 1801913 1802000 1
CDS:Y39A3CL.2 1802056 1802183 1
CDS:Y39A3CL.2 1803085 1803454 1
CDS:Y39A3CL.2 1804154 1804395 1
CDS:Y39A3CL.2 1804592 1805324 1
CDS:Y39A3CL.2 1806019 1806230 1
CDS:Y39A3CL.2 1806290 1806476 1
CDS:Y39A3CL.2 1806523 1806585 1
CDS:Y39A3CL.2 1806719 1806730 1

1 Sequence

Length
3831

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y39A3CL.2.1 Y39A3CL.2.1 4368   III: 1788333-1807147
Transcript:Y39A3CL.2.2 Y39A3CL.2.2 4296   III: 1789036-1807147