WormMine: Gene WBGene00196069

• WormBase Gene ID: WBGene00196069
• Gene Name: Y39A3CL.8
• Sequence Name: Y39A3CL.8
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in SIBDL based on single-cell RNA-seq studies. Is affected by mett-10 and ogt-1 based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 291

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00196069

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y39A3CL.8	Y39A3CL.8	291	III: 1795738-1796028

Other

0 CDSs

0 RNAi Result

10 Allele

• gk962532
• gk964281
• gkDf40
• tm10797
• gk167431
• WBVar02014865
• WBVar00042253
• WBVar01918304
• WBVar00042258
• WBVar01258252

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00196069
• Start: 1795738
• End: 1796028
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum	Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.	GFold3, logFC < -1 or > 1.	WBPaper00066703:L.plantarum-pdxH_upregulated
	Single-cell RNA-Seq cell group 22_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:22_0
	Transcripts that showed significantly increased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on peptone-rich (NA22) plates.	DESeq2, p-value < 0.05, fold change > 2.	WBPaper00061357:mett-10(ok2204)_upregulated_NA22

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00196069
• Start: 1795738
• End: 1796028
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 291

1 Sequence Ontology Term