WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y39A3CL.6 Sequence Name  Y39A3CL.6
Length (nt)  915   Chromosome Location  III: 1821200-1821423
Chromosome . Primary Identifier  III Chromosome Location . Start  1821200
Chromosome Location . End  1821423
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3CL.6

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE21657 PVF-1 34.1 304 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00001355
WBRNAi00056149
WBRNAi00020368
WBRNAi00036903

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y39A3CL.6 1821200 1821423 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004249 pvf-1 Y39A3CL.6 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y39A3CL.6 1821200 1821423 -1
CDS:Y39A3CL.6 1821484 1821568 -1
CDS:Y39A3CL.6 1821615 1821722 -1
CDS:Y39A3CL.6 1822665 1822742 -1
CDS:Y39A3CL.6 1822800 1823017 -1
CDS:Y39A3CL.6 1823654 1823771 -1
CDS:Y39A3CL.6 1823975 1824058 -1

1 Sequence

Length
915

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y39A3CL.6.1 Y39A3CL.6.1 1222   III: 1821149-1824314