WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A3CL.1a.1 Sequence Name  Y39A3CL.1a.1
Length (nt)  2184   Chromosome Location  III: 1834513-1846764
Chromosome . Primary Identifier  III Chromosome Location . Start  1834513
Chromosome Location . End  1846764 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3CL.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021440 rexd-1 Y39A3CL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A3CL.1a Y39A3CL.1a 2046   III: 1834520-1834606

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3CL.1a.1 1834513 1846764 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80266   94   III: 1834513-1834606 Caenorhabditis elegans
Exon80268   74   III: 1836133-1836206 Caenorhabditis elegans
Exon80270   103   III: 1836264-1836366 Caenorhabditis elegans
Exon80272   142   III: 1837119-1837260 Caenorhabditis elegans
Exon80274   369   III: 1838346-1838714 Caenorhabditis elegans
Exon80276   113   III: 1838776-1838888 Caenorhabditis elegans
Exon80278   329   III: 1840169-1840497 Caenorhabditis elegans
Exon80280   157   III: 1841754-1841910 Caenorhabditis elegans
Exon80282   234   III: 1842870-1843103 Caenorhabditis elegans
Exon80283   151   III: 1844373-1844523 Caenorhabditis elegans
Exon80286   418   III: 1846347-1846764 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3CL.1a.1 1834513 1846764 1

1 Sequence

Length
2184

1 Sequence Ontology Term

Identifier Name Description
transcript